Automating machine learning segmentation and restoration in ImageJ / Fiji
4.1 هزار بار بازدید -
3 سال پیش
-
This tutorial focuses on utilizing
This tutorial focuses on utilizing machine learning tools within ImageJ/Fiji to create powerful and rigorous automated analysis pipelines.
This tutorial includes:
0:00 - Overview of machine and deep learning
14:48 - Using Ilastik for pixel and object classification
33:58 - Combining Ilastik with macros for automation
40:29 - Using StarDist for cell segmentation
47:06 - Installing and using DeepImageJ
53:53 - Training your own network using CSBDeep
For a better understanding of how to create and use ImageJ/Fiji macros, we recommend watching this video first: Automating analysis with Fiji (ImageJ)
If you are just starting to use Fiji, try watching our first workshop, which introduces Fiji and includes time-saving steps to make image processing easier and more efficient:
Introduction to using Fiji (ImageJ)
Data used in this workshop is available here: https://www.dropbox.com/sh/czk9oxsbb2...
Scripts created during this workshop are available here:
https://github.com/lahammond/CI_Image...
Recorded on Thursday, November 11, 2021, as part of Cellular Imaging's 2021 Image Analysis Program by Luke Hammond (Director of Cellular Imaging, Zuckerman Institute, Columbia University)
https://www.cellularimaging.org/
This tutorial includes:
0:00 - Overview of machine and deep learning
14:48 - Using Ilastik for pixel and object classification
33:58 - Combining Ilastik with macros for automation
40:29 - Using StarDist for cell segmentation
47:06 - Installing and using DeepImageJ
53:53 - Training your own network using CSBDeep
For a better understanding of how to create and use ImageJ/Fiji macros, we recommend watching this video first: Automating analysis with Fiji (ImageJ)
If you are just starting to use Fiji, try watching our first workshop, which introduces Fiji and includes time-saving steps to make image processing easier and more efficient:
Introduction to using Fiji (ImageJ)
Data used in this workshop is available here: https://www.dropbox.com/sh/czk9oxsbb2...
Scripts created during this workshop are available here:
https://github.com/lahammond/CI_Image...
Recorded on Thursday, November 11, 2021, as part of Cellular Imaging's 2021 Image Analysis Program by Luke Hammond (Director of Cellular Imaging, Zuckerman Institute, Columbia University)
https://www.cellularimaging.org/
3 سال پیش
در تاریخ 1400/09/11 منتشر شده
است.
4,110
بـار بازدید شده