RNA Seq Analysis | How to visualize gene expression data | Volcano Plots with R ggplot

Bioinformatics Coach
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18.8 هزار بار بازدید - 2 سال پیش - This tutorial shows you how
This tutorial shows you how to visualize gene expression data by generating volcano plots using R Download the Rscript for this tutorial: www.patreon.com/posts/75743948 Use Galaxy to generate Volcano Plots:    • RNASeq Analysis on Galaxy Tutorials |...   RNA Seq Analysis with DESEq2:   • How I analyze RNA Seq Gene Expression...   RNA Seq Analysis Tutorials:   • RNA Seq Analysis Tutorials   Get more bioinformatics tutorials on Patreon: www.patreon.com/bigdataanalytics One-on-One coaching (Video Conferencing): calendly.com/bioinformaticscoach One-on-One coaching(Audio Call): clarity.fm/vincentappiah Support my work www.buymeacoffee.com/informatician www.paypal.com/paypalme/theinformatician www.patreon.com/bigdataanalytics Subscribe to my channels Bioinformatics:    / @bioinformaticscoach   Data Science:    / @datasciencecoach   Short Clips:    / @bioinformaticscforbeginners   Reach out [email protected] Volcano Plots in R | Bioinformatics | Reproducing Galaxy Tutorials | Beginners| Getting Started Course Materials ________________________________________________________________________________________________ Download the data here: training.galaxyproject.org/training-material/topic… R Source Code biocorecrg.github.io/CRG_RIntroduction/volcano-plo… How to Install R ________________________________________________________________________________________________ How to install R and R packages using Anaconda    • Install, Configure and Run R & R pack...   How to Install R in Ubuntu    • Install, Configure and Run R , Rstudi...   Useful tutorials ________________________________________________________________________________________________ Gene Expression Analysis    • How I analyze RNA Seq data using HISA...   Chapters ________________________________________________________________________________________________ 00:00 Introduction 01:23 PC Requirement 01:34 Download the example data 04:19 Install packages 06:45 Open R studio 06:55 Set the working directory 07:54 Load the R packages 08:30 Load the data 12:34 Add a new column to label the gene expression status of the genes 21:55 Plot the volcano plot 26:21 Add horizontal and vertical lines to the plots 30:02 Highlight the top genes on the plot 31:22 Sort and select the top genes based on pvalues 35:08 Label the top genes in the dataframe 39:27 Generate the volcano plot and highlight the top genes R ggplot R volcano plot Opening Music Buddha by Kontekst soundcloud.com/kontekstmusic Creative Commons — Attribution-ShareAlike 3.0 Unported — CC BY-SA 3.0 Free Download / Stream: bit.ly/2Pe7mBN Music promoted by Audio Library    • Buddha – Kontekst (No Copyright Music)   Volcano Plots with R ggplot | R for Bioinformatics | Reproducing Galaxy Tutorials #bioinformática #bioinformaticsforbeginners #bioinformatics #rprogrammingforbeginners #linuxforbeginners #linux #rna #rnaseq #datascience #datasciencecourse #datasciencetutorial ##bioinformática #genomics
2 سال پیش در تاریخ 1401/01/30 منتشر شده است.
18,819 بـار بازدید شده
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