PyMol tips: hide → unselected; copy to object; extract to object; export molecule, etc.
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A helpful feature in PyMol
A helpful feature in PyMol is hide → unselected
First, though, save a scene to return to the whole view
Then, save a new scene after
You can also, on a selection go to A → “copy to object” and make a separate, independent, instance of those things
You can extract to object if you want to remove it from the original object and make separate
You can also export an object or a selection as a new PDB file if you want to be able to open it independently later
If you change things in a new object, it won’t change the original, but if you change things in a selection it will
No matter what, be sure to save save your selections, either through A → rename selection or in the command line as set_name sele, newname
And, save scenes so you can return to whatever view you have
And, of course, save your PyMol session often!!
More on saving scenes and similar stuff: https://www.seevid.ir/fa/w/-Ct9OTMjG7Q
More on starting with PyMol: https://bit.ly/pymolintro YouTube: https://www.seevid.ir/fa/w/GpxCGQAhgi8
My friend KP (Kristen Procko) has some great tutorials on YouTube (Molecular Memory channel) I recommend you check out too: • PyMOL 101 with Molecular Memory
Structural biology resources - guide to my favorite software, articles, books, lectures, websites
downloadable version: https://bit.ly/structure_guide ; YouTube: https://www.seevid.ir/fa/w/OoWpQ_2pLac
* If you need a refresher on X-ray crystallography, start here: http://bit.ly/xraycrystallography2
* and I made a page on my blog that has links to all my structural biology posts: https://bit.ly/structural_biology
* and here's a link to my YouTube structural biology playlist: • Structural biology
* here are some key posts:
* resolution: blog: https://bit.ly/structure_resolution ; YouTube: https://www.seevid.ir/fa/w/Ijm-nDzLWhA https://www.seevid.ir/fa/w/1DZClUKowsY and this intro video: YouTube: https://www.seevid.ir/fa/w/t5WeMkY0skU
* understanding crystal structures: https://bit.ly/crystalstructuremodels & https://www.seevid.ir/fa/w/YK3VkqD2o2s
more about all sorts of things: #365DaysOfScience All (with topics listed) 👉 http://bit.ly/2OllAB0 or search blog: http://thebumblingbiochemist.com/
#scicomm #biochemistry #molecularbiology #biology #sciencelife #science #realtimechem
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