R for Bioinformatics | How to Visualize Phylogenetic Trees using ggtree
3.7 هزار بار بازدید -
2 سال پیش
-
________________________________________________________________________________Course Materials________________________________________________________________________________download the dataset here
________________________________________________________________________________
Course Materials
________________________________________________________________________________
download the dataset here
https://github.com/vappiah/R-for-Bioi...
ggtree documentation
https://bioconductor.org/packages/dev...
https://yulab-smu.top/treedata-book/
http://treegraph.bioinfweb.info/Help/...
________________________________________________________________________________________
Useful videos
________________________________________________________________________________________
How to generate phylogenetic trees using raxml
How to Build any Phylogenetic Trees u...
How to install R & R packages in Linux
Install, Configure and Run R , Rstudi...
How to install R & R packages in Linux using Anaconda
Install, Configure and Run R & R pack...
________________________________________________________________________________
Sections of this video
________________________________________________________________________________
00:00 intro and pc requirement
00:33 online manual for ggtree
02:17 dowload the example data
04:26 load the library
04:40 set the working directory
06:41 read a phylogenetic tree
08:28 generate a basic tree
08:55 add labels
10:05 disable ladderizing
12:34 change the color of lines
13:49 change size of lines
14:54 change the line type
15:45 change line color,size and type at once:
17:23 prevent ggtree from using branch length to scale the tree
19:36 change layout of the tree
22:18 show bootstrap values on trees
________________________________________________________________________________________________
Subscribe to my channels
________________________________________________________________________________________________
Bioinformatics: @bioinformaticscoach
Data Science: @datasciencecoach
Short Clips: @bioinformaticsclips
______________________________________________________________________________________
Support this Channel
________________________________________________________________________________________________
Patreon: bigdataanalytics
https://www.buymeacoffee.com/informat...
https://paypal.me/theinformatician
________________________________________________________________________________________________
One-on-one coaching
________________________________________________________________________________________________
https://clarity.fm/vincentappiah
________________________________________________________________________________________________
Reach out
________________________________________________________________________________________________
[email protected]
#bioinformatics #bioinformaticsforbeginners #bioinformática #genomics #genomesequencing #genome #phylogeny #rprogrammingforbeginners #rprogramming
Course Materials
________________________________________________________________________________
download the dataset here
https://github.com/vappiah/R-for-Bioi...
ggtree documentation
https://bioconductor.org/packages/dev...
https://yulab-smu.top/treedata-book/
http://treegraph.bioinfweb.info/Help/...
________________________________________________________________________________________
Useful videos
________________________________________________________________________________________
How to generate phylogenetic trees using raxml
How to Build any Phylogenetic Trees u...
How to install R & R packages in Linux
Install, Configure and Run R , Rstudi...
How to install R & R packages in Linux using Anaconda
Install, Configure and Run R & R pack...
________________________________________________________________________________
Sections of this video
________________________________________________________________________________
00:00 intro and pc requirement
00:33 online manual for ggtree
02:17 dowload the example data
04:26 load the library
04:40 set the working directory
06:41 read a phylogenetic tree
08:28 generate a basic tree
08:55 add labels
10:05 disable ladderizing
12:34 change the color of lines
13:49 change size of lines
14:54 change the line type
15:45 change line color,size and type at once:
17:23 prevent ggtree from using branch length to scale the tree
19:36 change layout of the tree
22:18 show bootstrap values on trees
________________________________________________________________________________________________
Subscribe to my channels
________________________________________________________________________________________________
Bioinformatics: @bioinformaticscoach
Data Science: @datasciencecoach
Short Clips: @bioinformaticsclips
______________________________________________________________________________________
Support this Channel
________________________________________________________________________________________________
Patreon: bigdataanalytics
https://www.buymeacoffee.com/informat...
https://paypal.me/theinformatician
________________________________________________________________________________________________
One-on-one coaching
________________________________________________________________________________________________
https://clarity.fm/vincentappiah
________________________________________________________________________________________________
Reach out
________________________________________________________________________________________________
[email protected]
#bioinformatics #bioinformaticsforbeginners #bioinformática #genomics #genomesequencing #genome #phylogeny #rprogrammingforbeginners #rprogramming
2 سال پیش
در تاریخ 1401/06/14 منتشر شده
است.
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